MolNFT v1 · #150367 · protein
E. COLI microcin synthetase mcbbcd complex with pro-MCCB17, ADP and phosphate bound
6GRG: “E. COLI microcin synthetase mcbbcd complex with pro-MCCB17, ADP and phosphate bound”. X-ray diffraction, 9 ligands (F6N, FMN, ATP). MolNFT v1 #150367 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GRG
- Type
- protein
- Length
- 1,247 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P05834, P23184, P23185, P23186
- Ligands
- F6N, FMN, ATP, ADP, MG, ZN, SO4, PO4, CL
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 20 | — | P05834 |
| 1 | — | protein | 284 | — | P23184 |
| 2 | — | protein | 282 | — | P23184 |
| C | — | protein | 265 | — | P23185 |
| D | — | protein | 396 | — | P23186 |
Ligands and binding sites
- F6N · 2-(aminomethyl)-1,3-oxazole-4-carboxylic acid · ligand · chains A, C
- FMN · Flavin mononucleotide · ligand · chains A, C
- ATP · Adenosine-5'-triphosphate · ligand · chains 2
- ADP · Adenosine-5'-diphosphate · ligand · chains D
- MG · Magnesium ion · metal · 3 copies · chains D
- ZN · Zinc ion · metal · 2 copies · chains 1, 2
- SO4 · Sulfate ion · ion · chains 1
- PO4 · Phosphate ion · ion · chains D
- CL · Chloride ion · ion · chains D
- EDO · 1,2-ethanediol · additive · 2 copies · chains 2, D
- GOL · Glycerol · additive · chains 1
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GRG · E. coli Microcin synthetase McbBCD complex with pro-MccB17, ADP and phosphate bound · the same entry in another collection · chain D against D, TM-score 1.00
- P23186 · AlphaFold monomer V2.0 prediction for microcin B17-processing protein mcbd (P23186) · a predicted model of the same protein · chain D against A, TM-score 1.00
- P23185 · AlphaFold monomer V2.0 prediction for microcin B17-processing protein mcbc (P23185) · a predicted model of the same protein · chain C against A, TM-score 0.94
- P23184 · AlphaFold monomer V2.0 prediction for microcin B17-processing protein mcbb (P23184) · a predicted model of the same protein · chain 1 against A, TM-score 0.89
- P05834 · AlphaFold monomer V2.0 prediction for bacteriocin microcin B17 (P05834) · a predicted model of the same protein · chain A against A, TM-score 0.59
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05834
- Every structure of UniProt P23184
- Every structure of UniProt P23185
- Every structure of UniProt P23186
- Elsewhere: RCSB PDB 6GRG · PDBe 6GRG · UniProt P05834 · UniProt P23184 · UniProt P23185 · UniProt P23186
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.