MolNFT v1 · #150297 · protein
Crystal structure of the ligand-free form of domain 1 from tmargbp
6GPD · Amino acid ABC transporter, periplasmic amino acid-binding…: “Crystal structure of the ligand-free form of domain 1 from tmargbp”. X-ray diffraction, 2 pockets (best druggability 0.40). MolNFT v1 #150297 on GenesisL1: 3D structure…
- PDB
- 6GPD
- Type
- protein
- Length
- 252 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Amino acid ABC transporter, periplasmic amino acid-binding PROTEIN,AMINO acid ABC…
- UniProt
- Q9WZ62
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Amino acid ABC transporter, periplasmic amino acid-binding PROTEIN,AMINO acid ABC transporter, periplasmic amino acid-binding protein | protein | 126 | 37% helix, 24% strand | Q9WZ62 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 118 | 0.40 | 0.75 | 17 | empty |
| 2 | 53 | 0.37 | 0.80 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 461 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6GPD · Crystal structure of the ligand-free form of domain 1 from TmArgBP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZ62
- Elsewhere: RCSB PDB 6GPD · PDBe 6GPD · UniProt Q9WZ62
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