MolNFT v1 · #150290 · protein
Mamm ctd - copper form
6GP6 · Magnetosome protein mamm: “Mamm ctd - copper form”. X-ray diffraction, 1 ligand (CU), 1 pocket (best druggability 0.69). MolNFT v1 #150290 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GP6
- Type
- protein
- Length
- 194 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Magnetosome protein mamm
- UniProt
- Q6NE57
- Ligands
- CU
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Magnetosome protein mamm | protein | 103 | 36% helix, 32% strand | Q6NE57 |
| B | Magnetosome protein mamm | protein | 91 | 34% helix, 33% strand | Q6NE57 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 3 copies · chains A, B
- BME · Beta-mercaptoethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 540 | 0.69 | 0.78 | 48 | CU, BME |
Interfaces
1 interface between chains.
- A–B · 771 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6GP6 · MamM CTD - Copper form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NE57
- Elsewhere: RCSB PDB 6GP6 · PDBe 6GP6 · UniProt Q6NE57
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