MolNFT v1 · #150196 · protein
Structure of cytochrome P450 CYP109Q5 from chondromyces apiculatus
6GMF · Putative cytochrome P450 hydroxylase: “Structure of cytochrome P450 CYP109Q5 from chondromyces apiculatus”. X-ray diffraction, 1 ligand (HEM), 3 pockets (best druggability 0.82). MolNFT v1 #150196 on GenesisL1: 3D structure, binding…
- PDB
- 6GMF
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative cytochrome P450 hydroxylase
- UniProt
- A0A017T5A5
- Ligands
- HEM
- Pockets
- 3 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative cytochrome P450 hydroxylase | protein | 386 | 53% helix, 11% strand | A0A017T5A5 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 766 | 0.82 | 0.85 | 68 | HEM |
| 2 | 95 | 0.47 | 0.81 | 20 | empty |
| 3 | 62 | 0.31 | 0.75 | 16 | empty |
Compared structures
- 6GMF · Structure of Cytochrome P450 CYP109Q5 from Chondromyces apiculatus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A017T5A5
- Elsewhere: RCSB PDB 6GMF · PDBe 6GMF · UniProt A0A017T5A5
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