MolNFT v1 · #150158 · DNA
Intercalation of [RU(TAP)2(11-br-DPPZ)]2+ bound to D(TCGGCGCCGA)2
6GLD: “Intercalation of [RU(TAP)2(11-br-DPPZ)]2+ bound to D(TCGGCGCCGA)2”. X-ray diffraction, 2 ligands (F3K, BA). MolNFT v1 #150158 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GLD
- Type
- DNA
- Length
- 10 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D(TCGGCGCCGA)2
- Ligands
- F3K, BA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | D(TCGGCGCCGA)2 | dna | 10 | — | — |
Ligands and binding sites
- F3K · Ruthenium (bis-(tetraazaphenanthrene)) (11-bromo-dipyridophenazine) · ligand · chains B
- BA · Barium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GLD · Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6GLD · PDBe 6GLD
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