MolNFT v1 · #149932 · protein
Crystal structure of mycobacterium tuberculosis cytochrome P450 CYP121A1 in complex with triazole pyrazole inhibitor 10J
6GEO · Mycocyclosin synthase: “Crystal structure of mycobacterium tuberculosis cytochrome P450 CYP121A1 in complex with triazole pyrazole…”. X-ray diffraction, 3 ligands (HEM, EW2, SO4), 3 pockets (best druggability 0.87). MolNFT v1…
- PDB
- 6GEO
- Type
- protein
- Length
- 394 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mycocyclosin synthase
- EC
- 1.14.21.9
- UniProt
- P9WPP6
- Ligands
- HEM, EW2, SO4
- Pockets
- 3 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mycocyclosin synthase (EC 1.14.21.9) | protein | 394 | 52% helix, 10% strand | P9WPP6 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- EW2 · 2-chloranyl-3-[4-(imidazol-1-ylmethyl)-1-phenyl-pyrazol-3-yl]-1~{H}-indole · ligand · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 865 | 0.87 | 0.89 | 77 | HEM, SO4, EW2 |
| 2 | 62 | 0.53 | 0.87 | 23 | empty |
| 3 | 60 | 0.30 | 0.75 | 17 | empty |
Compared structures
- 6GEO · Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP121A1 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WPP6 · AlphaFold monomer V2.0 prediction for mycocyclosin synthase (P9WPP6) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WPP6
- Elsewhere: RCSB PDB 6GEO · PDBe 6GEO · UniProt P9WPP6
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