MolNFT v1 · #149910 · RNA
Solution structure of the R(UGGUGGU)4 RNA quadruplex
6GE1 · RNA (5'-R(*UP*GP*GP*UP*GP*GP*U)-3'): “Solution structure of the R(UGGUGGU)4 RNA quadruplex”. Solution nmr. MolNFT v1 #149910 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GE1
- Type
- RNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*UP*GP*GP*UP*GP*GP*U)-3')
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | RNA (5'-R(*UP*GP*GP*UP*GP*GP*U)-3') | rna | 7 | — | — |
Interfaces
6 interfaces between chains.
- A–B · 361 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- B–C · 357 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- C–D · 355 Ų buried · 28 hydrogen bonds · nucleic-nucleic
- A–D · 337 Ų buried · 25 hydrogen bonds · nucleic-nucleic
- A–C · 81 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 6GE1 · Solution structure of the r(UGGUGGU)4 RNA quadruplex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6GE1 · PDBe 6GE1
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