MolNFT v1 · #149882 · protein

Cytochrome C in complex with sulfonato-CALIX[8]ARENE, P31 form

6GD8: “Cytochrome C in complex with sulfonato-CALIX[8]ARENE, P31 form”. X-ray diffraction, 2 ligands (HEC, EVB). MolNFT v1 #149882 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6GD8
Type: protein
Length: 432 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P00044
Ligands: HEC, EVB

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	—	protein	108	—	P00044

Ligands and binding sites

HEC · Heme C · ligand · 4 copies · chains A, B, C, D
EVB · sulfonato-calix[8]arene · ligand · 4 copies · chains A, C, B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6GD8 · Cytochrome c in complex with Sulfonato-calix[8]arene, P31 form · the same entry in another collection · chain D against D, TM-score 1.00
P00044 · AlphaFold monomer V2.0 prediction for cytochrome C isoform 1 (P00044) · a predicted model of the same protein · chain D against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00044
Elsewhere: RCSB PDB 6GD8 · PDBe 6GD8 · UniProt P00044

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