MolNFT v1 · #149726 · DNA
[RU(TAP)2(11,12-CN2-DPPZ)]2+ bound to D(CCGGACCCGG/CCGGGTCCGG)2
6G8S: “[RU(TAP)2(11,12-CN2-DPPZ)]2+ bound to D(CCGGACCCGG/CCGGGTCCGG)2”. X-ray diffraction, 2 ligands (EQQ, BA). MolNFT v1 #149726 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6G8S
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- EQQ, BA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | dna | 10 | — | — |
| B | — | dna | 10 | — | — |
Ligands and binding sites
- EQQ · Ruthenium (bis-(tetraazaphenanthrene)) (11,12-dicyano-dipyridophenazine) · ligand · 2 copies · chains A, B
- BA · Barium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6G8S · [Ru(TAP)2(11,12-CN2-dppz)]2+ bound to d(CCGGACCCGG/CCGGGTCCGG)2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6G8S · PDBe 6G8S
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