MolNFT v1 · #14945 · protein
Maltodextrin-binding protein (maltose-binding protein) mutant, with arginine replacing tryptophan at position 230 (TRP-230-arg), complexed with maltose
1MPD: “Maltodextrin-binding protein (maltose-binding protein) mutant, with arginine replacing tryptophan at position…”. X-ray diffraction, 1 ligand (GLC), 2 pockets (best druggability 0.73). MolNFT v1 #14945 on GenesisL1: 3D structure…
- PDB
- 1MPD
- Type
- protein
- Length
- 370 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltodextrin-binding protein
- UniProt
- P02928
- Ligands
- GLC
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltodextrin-binding protein | protein | 370 | 45% helix, 21% strand | P02928 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 373 | 0.73 | 0.84 | 40 | GLC |
| 2 | 50 | 0.26 | 0.73 | 15 | empty |
Compared structures
- 1MPD · Maltodextrin-binding protein (maltose-binding protein) mutant, with arginine replacing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02928
- Elsewhere: RCSB PDB 1MPD · PDBe 1MPD · UniProt P02928
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