MolNFT v1 · #149428 · protein
Crystal structure of a GH8 xylobiose complex from teredinibacter turnerae
6G09 · Glycoside hydrolase family 8 domain protein: “Crystal structure of a GH8 xylobiose complex from teredinibacter turnerae”. X-ray diffraction, 1 ligand (XYP), 2 pockets (best druggability 0.58). MolNFT v1 #149428 on GenesisL1: 3D…
- PDB
- 6G09
- Type
- protein
- Length
- 392 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycoside hydrolase family 8 domain protein
- EC
- 3.2.1.-
- UniProt
- C5BJ89
- Ligands
- XYP
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycoside hydrolase family 8 domain protein (EC 3.2.1.-) | protein | 392 | 49% helix, 12% strand | C5BJ89 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 318 | 0.58 | 0.77 | 33 | XYP, EDO |
| 2 | 132 | 0.50 | 0.79 | 20 | empty |
Compared structures
- 6G09 · Crystal Structure of a GH8 xylobiose complex from Teredinibacter turnerae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5BJ89
- Elsewhere: RCSB PDB 6G09 · PDBe 6G09 · UniProt C5BJ89
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.