MolNFT v1 · #149308 · protein
Structure of an E333Q variant of the GH99 endo-alpha-mannanase from bacteroides xylanisolvens in complex with alpha-1,3-mannobiose and alpha-1,2-mannobiose
6FWQ · Glycosyl hydrolase family 71: “Structure of an E333Q variant of the GH99 endo-alpha-mannanase from bacteroides xylanisolvens in complex with…”. X-ray diffraction, 2 ligands (MAN, NA), 2 pockets (best druggability 0.51). MolNFT v1…
- PDB
- 6FWQ
- Type
- protein
- Length
- 342 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyl hydrolase family 71
- UniProt
- D6D1V7
- Ligands
- MAN, NA
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyl hydrolase family 71 | protein | 342 | 33% helix, 17% strand | D6D1V7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.51 | 0.78 | 30 | MAN |
| 2 | 57 | 0.31 | 0.76 | 16 | empty |
Compared structures
- 6FWQ · Structure of an E333Q variant of the GH99 endo-alpha-mannanase from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6D1V7
- Elsewhere: RCSB PDB 6FWQ · PDBe 6FWQ · UniProt D6D1V7
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