MolNFT v1 · #149145 · protein
Crystal structure of scfv-SM3 in complex with apd-sethrgalnac-rp
6FRJ: “Crystal structure of scfv-SM3 in complex with apd-sethrgalnac-rp”. X-ray diffraction, 2 ligands (A2G, NH2). MolNFT v1 #149145 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FRJ
- Type
- protein
- Length
- 232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- A2G, NH2
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 226 | — | — |
| B | — | protein | 6 | — | — |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains H, B
- NH2 · Amino group · ion · chains B
- EDO · 1,2-ethanediol · additive · 4 copies · chains H, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FRJ · Crystal structure of scFv-SM3 in complex with APD-SeThrGalNAc-RP · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6FRJ · PDBe 6FRJ
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