MolNFT v1 · #149047 · protein
Copper transporter oprc
6FOK · Putative copper transport outer membrane porin oprc: “Copper transporter oprc”. X-ray diffraction, 1 ligand (CU), 20 pockets (best druggability 0.85). MolNFT v1 #149047 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FOK
- Type
- protein
- Length
- 1,288 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative copper transport outer membrane porin oprc
- UniProt
- G3XD89
- Ligands
- CU
- Pockets
- 20 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative copper transport outer membrane porin oprc | protein | 651 | 4% helix, 58% strand | G3XD89 |
| B | Putative copper transport outer membrane porin oprc | protein | 637 | 4% helix, 60% strand | G3XD89 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 2 copies · chains A, B
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 12 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 283 | 0.85 | 0.96 | 49 | empty |
| 2 | 281 | 0.85 | 0.96 | 42 | empty |
| 3 | 261 | 0.84 | 0.96 | 44 | empty |
| 4 | 165 | 0.80 | 0.96 | 44 | empty |
| 5 | 1192 | 0.80 | 0.82 | 104 | empty |
Interfaces
1 interface between chains.
- A–B · 602 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6FOK · Copper transporter OprC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3XD89
- Elsewhere: RCSB PDB 6FOK · PDBe 6FOK · UniProt G3XD89
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