MolNFT v1 · #14896 · protein
Dimethyl propionate ester heme-containing cytochrome B5
1MNY: “Dimethyl propionate ester heme-containing cytochrome B5”. Solution nmr, 1 ligand (HDM), 2 pockets (best druggability 0.56). MolNFT v1 #14896 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1MNY
- Type
- protein
- Length
- 94 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome B5
- UniProt
- P00173
- Ligands
- HDM
- Pockets
- 2 · best druggability 0.56
Structure
solution nmr · 1 distinct chain · 31% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome B5 | protein | 94 | 31% helix, 15% strand | P00173 |
Ligands and binding sites
- HDM · Dimethyl propionate ester heme · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.56 | 0.81 | 21 | HDM |
| 2 | 87 | 0.37 | 0.76 | 20 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00173
- Elsewhere: RCSB PDB 1MNY · PDBe 1MNY · UniProt P00173
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