MolNFT v1 · #148958 · protein

Structure of acmjrl, a mannose binding jacalin related lectin from ananas comosus, in complex with mannose.

6FLY · Jacalin-like lectin: “Structure of acmjrl, a mannose binding jacalin related lectin from ananas comosus, in complex with mannose.”. X-ray diffraction, 1 ligand (MAN), 1 pocket (best druggability 0.26). MolNFT v1 #148958 on…

PDB: 6FLY
Type: protein
Length: 288 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Jacalin-like lectin
UniProt: Q53J09
Ligands: MAN
Pockets: 1 · best druggability 0.26

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 69% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Jacalin-like lectin	protein	144	0% helix, 69% strand	Q53J09

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.26	0.73	22	empty

Interfaces

1 interface between chains.

A–B · 803 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

6FLY · Structure of AcmJRL, a mannose binding jacalin related lectin from Ananas comosus, in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53J09
Elsewhere: RCSB PDB 6FLY · PDBe 6FLY · UniProt Q53J09

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