MolNFT v1 · #148926 · protein
Crystal structure of zebrafish sirtuin 5 in complex with 3- (PHENYLTHIO)SUCCINYL-CPS1 peptide
6FKZ: “Crystal structure of zebrafish sirtuin 5 in complex with 3- (PHENYLTHIO)SUCCINYL-CPS1 peptide”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #148926 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FKZ
- Type
- protein
- Length
- 546 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6DHI5
- Ligands
- ZN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 264 | — | Q6DHI5 |
| B | — | protein | 266 | — | Q6DHI5 |
| E, H | — | protein | 8 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- GOL · Glycerol · additive · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FKZ · Crystal structure of zebrafish Sirtuin 5 in complex with 3-(phenylthio)succinyl-CPS1… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6DHI5 · AlphaFold monomer V2.0 prediction for NAD-dependent protein deacylase sirtuin-5… · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6DHI5
- Elsewhere: RCSB PDB 6FKZ · PDBe 6FKZ · UniProt Q6DHI5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.