MolNFT v1 · #148912 · protein
Drosophila semaphorin 1B, extracellular domains 1-2
6FKK: “Drosophila semaphorin 1B, extracellular domains 1-2”. X-ray diffraction, 3 ligands (MAN, NAG, BMA). MolNFT v1 #148912 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FKK
- Type
- protein
- Length
- 513 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7KK54
- Ligands
- MAN, NAG, BMA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 513 | — | Q7KK54 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 7 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 2 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FKK · Drosophila Semaphorin 1b, extracellular domains 1-2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7KK54
- Elsewhere: RCSB PDB 6FKK · PDBe 6FKK · UniProt Q7KK54
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