MolNFT v1 · #148803 · protein
Crystal structure of the TS2631 endolysin from thermus scotoductus phage with the unique N-terminal moiety responsible for peptidoglycan anchoring
6FHG · Lyst endolysin: “Crystal structure of the TS2631 endolysin from thermus scotoductus phage with the unique N-terminal moiety…”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.38). MolNFT v1 #148803 on GenesisL1: 3D…
- PDB
- 6FHG
- Type
- protein
- Length
- 309 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lyst endolysin
- UniProt
- A0A088FLK9
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lyst endolysin | protein | 156 | 31% helix, 17% strand | A0A088FLK9 |
| B | Lyst endolysin | protein | 153 | 31% helix, 17% strand | A0A088FLK9 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.38 | 0.76 | 17 | empty |
| 2 | 57 | 0.31 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1394 Ų buried · 20 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6FHG · Crystal structure of the Ts2631 endolysin from Thermus scotoductus phage with the unique… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A088FLK9
- Elsewhere: RCSB PDB 6FHG · PDBe 6FHG · UniProt A0A088FLK9
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