MolNFT v1 · #148725 · protein

X-ray structure of bovine heart cytochrome C at high ionic strength

6FF5: “X-ray structure of bovine heart cytochrome C at high ionic strength”. X-ray diffraction, 3 ligands (HEC, NO3, SO4), 1 pocket (best druggability 0.75). MolNFT v1 #148725 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6FF5
Type: protein
Length: 104 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C
UniProt: P62894
Ligands: HEC, NO3, SO4
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C	protein	104	41% helix, 2% strand	P62894

Ligands and binding sites

HEC · Heme C · ligand · chains A
NO3 · Nitrate ion · ion · 5 copies · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	211	0.75	0.90	36	HEC

Modifications

Observed in the structure: 2 cofactor (heme c attachment).

Compared structures

6FF5 · X-ray structure of bovine heart cytochrome c at high ionic strength · the same entry in another collection · chain A against A, TM-score 1.00
P62894 · AlphaFold monomer V2.0 prediction for cytochrome C (P62894) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P62894
Elsewhere: RCSB PDB 6FF5 · PDBe 6FF5 · UniProt P62894

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