MolNFT v1 · #148584 · protein
TENEURIN3 monomer
6FAY · ODZ3 protein: “TENEURIN3 monomer”. Electron microscopy, 1 ligand (NAG), 20 pockets (best druggability 0.87). MolNFT v1 #148584 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FAY
- Type
- protein
- Length
- 1,518 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ODZ3 protein
- UniProt
- B7ZNJ5
- Ligands
- NAG
- Pockets
- 20 · best druggability 0.87
Structure
electron microscopy · 1 distinct chain · 3% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ODZ3 protein | protein | 1518 | 3% helix, 43% strand | B7ZNJ5 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 857 | 0.87 | 0.89 | 98 | empty |
| 2 | 1170 | 0.86 | 0.87 | 131 | empty |
| 3 | 966 | 0.86 | 0.87 | 89 | empty |
| 4 | 186 | 0.78 | 0.93 | 33 | empty |
| 5 | 126 | 0.77 | 0.96 | 35 | empty |
Modifications
Observed in the structure: 5 disulfide, 5 glycan (disulfide, N-glycosylation).
Compared structures
- 6FAY · Teneurin3 monomer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7ZNJ5
- Elsewhere: RCSB PDB 6FAY · PDBe 6FAY · UniProt B7ZNJ5
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