MolNFT v1 · #148546 · protein
Crystal structure of human testis angiotensin-1 converting enzyme in complex with sampatrilat.
6F9T · Angiotensin-converting enzyme: “Crystal structure of human testis angiotensin-1 converting enzyme in complex with sampatrilat.”. X-ray diffraction, 8 ligands (D0Z, NAG, MAN), 4 pockets (best druggability 0.81). MolNFT v1 #148546 on…
- PDB
- 6F9T
- Type
- protein
- Length
- 586 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Angiotensin-converting enzyme
- EC
- 3.2.1.-, 3.4.15.1
- UniProt
- P12821
- Ligands
- D0Z, NAG, MAN, BMA, FUC, ZN, CL, BO3
- Pockets
- 4 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Angiotensin-converting enzyme (EC 3.2.1.-, 3.4.15.1) | protein | 586 | 63% helix, 3% strand | P12821 |
Ligands and binding sites
- D0Z · Sampatrilat · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- FUC · alpha-L-fucopyranose · sugar · chains A
- ZN · Zinc ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- BO3 · Boric acid · ion · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
- IMD · Imidazole · additive · 2 copies · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 567 | 0.81 | 0.87 | 57 | ZN, D0Z, EDO, PEG |
| 2 | 287 | 0.72 | 0.85 | 43 | PEG |
| 3 | 102 | 0.58 | 0.86 | 28 | empty |
| 4 | 89 | 0.35 | 0.75 | 27 | empty |
Modifications
Observed in the structure: 3 disulfide, 2 glycan, 1 modified (disulfide, N-glycosylation, oxidation).
Compared structures
- 6F9T · Crystal structure of human testis Angiotensin-1 converting enzyme in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P12821 · AlphaFold monomer V2.0 prediction for angiotensin-converting enzyme (P12821) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12821
- Elsewhere: RCSB PDB 6F9T · PDBe 6F9T · UniProt P12821
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