MolNFT v1 · #148513 · protein
Crystal structure of the PDE4D catalytic domain in complex with gebr- 18A
6F8W: “Crystal structure of the PDE4D catalytic domain in complex with gebr- 18A”. X-ray diffraction, 3 ligands (D0E, MG, ZN). MolNFT v1 #148513 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6F8W
- Type
- protein
- Length
- 653 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q08499
- Ligands
- D0E, MG, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 322 | — | Q08499 |
| B | — | protein | 331 | — | Q08499 |
Ligands and binding sites
- D0E · 3-[3-(3-cyclopentyloxy-4-methoxy-phenyl)pyrazol-1-yl]-1-morpholin-4-yl-propan-1-one · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 5 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6F8W · Crystal structure of the PDE4D catalytic domain in complex with GEBR-18a · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08499
- Elsewhere: RCSB PDB 6F8W · PDBe 6F8W · UniProt Q08499
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