MolNFT v1 · #148436 · protein
Crystal structure of the FE(II)/ALPHA-ketoglutarate dependent dioxygenase KDO1 with FE(II)/SUCCINATE/(3S)-3-hydroxy-L-lysine
6F6J: “Crystal structure of the FE(II)/ALPHA-ketoglutarate dependent dioxygenase KDO1 with…”. X-ray diffraction, 1 ligand (FE). MolNFT v1 #148436 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6F6J
- Type
- protein
- Length
- 1,306 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C7QJ42
- Ligands
- FE
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 326 | — | C7QJ42 |
| B, D | — | protein | 327 | — | C7QJ42 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 4 copies · chains A, B, C, D
- SIN · Succinic acid · additive · 4 copies · chains A, B, C, D
- ACT · Acetate ion · additive · 2 copies · chains A, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6F6J · Crystal structure of the Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO1 with… · the same entry in another collection · chain B against B, TM-score 1.00
- C7QJ42 · AlphaFold monomer V2.0 prediction for L-lysine 3-hydroxylase (C7QJ42) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7QJ42
- Elsewhere: RCSB PDB 6F6J · PDBe 6F6J · UniProt C7QJ42
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