MolNFT v1 · #148401 · protein
Structure of deformed wing virus carrying the GFP gene
6F5J · Genome polyprotein: “Structure of deformed wing virus carrying the GFP gene”. Electron microscopy, 9 pockets (best druggability 0.63). MolNFT v1 #148401 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6F5J
- Type
- protein
- Length
- 894 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Genome polyprotein
- UniProt
- L0CTV4, E0YTW0, Q7TG18
- Pockets
- 9 · best druggability 0.63
Structure
electron microscopy · 3 distinct chains · 13% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Genome polyprotein | protein | 252 | 12% helix, 28% strand | L0CTV4 |
| B | Genome polyprotein | protein | 249 | 16% helix, 34% strand | E0YTW0 |
| C | Genome polyprotein | protein | 393 | 11% helix, 31% strand | Q7TG18 |
Pockets
9 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 425 | 0.63 | 0.77 | 59 | empty |
| 2 | 181 | 0.49 | 0.77 | 26 | empty |
| 3 | 132 | 0.44 | 0.77 | 23 | empty |
| 4 | 152 | 0.44 | 0.75 | 23 | empty |
| 5 | 119 | 0.41 | 0.75 | 19 | empty |
Interfaces
3 interfaces between chains.
- A–C · 4761 Ų buried · 62 hydrogen bonds · protein-protein
- A–B · 1461 Ų buried · 22 hydrogen bonds · protein-protein
- B–C · 1375 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6F5J · Structure of deformed wing virus carrying the GFP gene · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L0CTV4
- Every structure of UniProt E0YTW0
- Every structure of UniProt Q7TG18
- Elsewhere: RCSB PDB 6F5J · PDBe 6F5J · UniProt L0CTV4 · UniProt E0YTW0 · UniProt Q7TG18
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