MolNFT v1 · #148142 · protein

C-terminal part (residues 224-515) of porm

6EY5 · T9SS component cytoplasmic membrane protein porm: “C-terminal part (residues 224-515) of porm”. X-ray diffraction, 1 ligand (ZN), 6 pockets (best druggability 0.72). MolNFT v1 #148142 on GenesisL1: 3D structure, binding sites and…

PDB: 6EY5
Type: protein
Length: 585 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: T9SS component cytoplasmic membrane protein porm
UniProt: A0A1R4DSC1
Ligands: ZN
Pockets: 6 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	T9SS component cytoplasmic membrane protein porm	protein	292	5% helix, 54% strand	A0A1R4DSC1
B	T9SS component cytoplasmic membrane protein porm	protein	293	6% helix, 53% strand	A0A1R4DSC1

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	437	0.72	0.82	46	empty
2	694	0.70	0.77	73	empty
3	314	0.63	0.79	37	empty
4	175	0.60	0.83	24	empty
5	150	0.50	0.79	25	ZN

Interfaces

1 interface between chains.

A–B · 5042 Å² buried · 79 hydrogen bonds · protein-protein

Compared structures

6EY5 · C-terminal part (residues 224-515) of PorM · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1R4DSC1
Elsewhere: RCSB PDB 6EY5 · PDBe 6EY5 · UniProt A0A1R4DSC1

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