MolNFT v1 · #148062 · protein

Adhesin domain of prgb from enterococcus faecalis

6EVU: “Adhesin domain of prgb from enterococcus faecalis”. X-ray diffraction, 1 ligand (PO4), 2 pockets (best druggability 0.57). MolNFT v1 #148062 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6EVU
Type: protein
Length: 313 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Prgb
UniProt: Q04112
Ligands: PO4
Pockets: 2 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Prgb	protein	313	10% helix, 35% strand	Q04112

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	263	0.57	0.78	39	TRS
2	189	0.52	0.78	23	empty

Compared structures

6EVU · Adhesin domain of PrgB from Enterococcus faecalis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04112
Elsewhere: RCSB PDB 6EVU · PDBe 6EVU · UniProt Q04112

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.