MolNFT v1 · #148061 · protein
Characterization of 2-deoxyribosyltransferase from psychrotolerant bacterium bacillus psychrosaccharolyticus: a suitable biocatalyst for the industrial synthesis of antiviral and antitumoral nucleosides
6EVS · N-deoxyribosyltransferase: “Characterization of 2-deoxyribosyltransferase from psychrotolerant bacterium bacillus psychrosaccharolyticus…”. X-ray diffraction, 2 pockets (best druggability 0.64). MolNFT v1 #148061 on GenesisL1: 3D…
- PDB
- 6EVS
- Type
- protein
- Length
- 274 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-deoxyribosyltransferase
- EC
- 2.4.2.6
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | N-deoxyribosyltransferase (EC 2.4.2.6) | protein | 137 | 42% helix, 15% strand | — |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 272 | 0.64 | 0.81 | 40 | empty |
| 2 | 299 | 0.61 | 0.79 | 40 | empty |
Interfaces
1 interface between chains.
- A–B · 1438 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6EVS · Characterization of 2-deoxyribosyltransferase from psychrotolerant bacterium Bacillus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6EVS · PDBe 6EVS
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