MolNFT v1 · #14805 · protein

Crystal structure of nitrophorin 4 complexed with 4-iodopyrazole

1ML7: “Crystal structure of nitrophorin 4 complexed with 4-iodopyrazole”. X-ray diffraction, 2 ligands (PYZ, HEV), 1 pocket (best druggability 0.79). MolNFT v1 #14805 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1ML7
Type: protein
Length: 184 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nitrophorin 4
UniProt: Q94734
Ligands: PYZ, HEV
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nitrophorin 4	protein	184	13% helix, 43% strand	Q94734

Ligands and binding sites

PYZ · 4-iodopyrazole · ligand · 2 copies · chains A
HEV · 5,8-dimethyl-1,2,3,4-tetravinylporphine-6,7-dipropionic acid ferrous complex · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	382	0.79	0.88	42	HEV, PYZ

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1ML7 · Crystal structure of nitrophorin 4 complexed with 4-iodopyrazole · the same entry in another collection · chain A against A, TM-score 1.00
Q94734 · AlphaFold monomer V2.0 prediction for nitrophorin-4 (Q94734) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q94734
Elsewhere: RCSB PDB 1ML7 · PDBe 1ML7 · UniProt Q94734

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.