MolNFT v1 · #148005 · protein
Structure of the arsenite-bound form of aiox from rhizobium sp. str. nt-26
6EU7 · Putative periplasmic phosphite-binding-like protein (pbl)…: “Structure of the arsenite-bound form of aiox from rhizobium sp. str. nt-26”. X-ray diffraction, 12 pockets (best druggability 0.71). MolNFT v1 #148005 on GenesisL1: 3D…
- PDB
- 6EU7
- Type
- protein
- Length
- 1,552 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative periplasmic phosphite-binding-like protein (pbl) ptxb-like protein designated…
- UniProt
- L0NML6
- Pockets
- 12 · best druggability 0.71
Structure
x-ray diffraction · 3 distinct chains · 44% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Putative periplasmic phosphite-binding-like protein (pbl) ptxb-like protein designated aiox | protein | 260 | 46% helix, 23% strand | L0NML6 |
| B | Putative periplasmic phosphite-binding-like protein (pbl) ptxb-like protein designated aiox | protein | 261 | 44% helix, 22% strand | L0NML6 |
| D, E, F | Putative periplasmic phosphite-binding-like protein (pbl) ptxb-like protein designated aiox | protein | 257 | 44% helix, 22% strand | L0NML6 |
Pockets
12 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 751 | 0.71 | 0.77 | 70 | empty |
| 2 | 649 | 0.70 | 0.78 | 55 | empty |
| 3 | 658 | 0.69 | 0.77 | 58 | empty |
| 4 | 239 | 0.56 | 0.78 | 34 | empty |
| 5 | 150 | 0.48 | 0.77 | 23 | empty |
Interfaces
5 interfaces between chains.
- B–E · 571 Ų buried · 1 hydrogen bond · protein-protein
- E–F · 546 Ų buried · 5 hydrogen bonds · protein-protein
- C–D · 546 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 544 Ų buried · 5 hydrogen bonds · protein-protein
- A–D · 421 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (nonstandard).
Compared structures
- 6EU7 · Structure of the arsenite-bound form of AioX from Rhizobium sp. str. NT-26 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L0NML6
- Elsewhere: RCSB PDB 6EU7 · PDBe 6EU7 · UniProt L0NML6
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