MolNFT v1 · #147939 · protein
HIV capsid hexamer with IP6 ligand
6ES8 · Gag protein: “HIV capsid hexamer with IP6 ligand”. X-ray diffraction, 1 ligand (IHP). MolNFT v1 #147939 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ES8
- Type
- protein
- Length
- 205 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag protein
- UniProt
- B9V8I5
- Ligands
- IHP
Structure
x-ray diffraction · 1 distinct chain · 60% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gag protein | protein | 205 | 60% helix, 3% strand | B9V8I5 |
Ligands and binding sites
- IHP · Inositol hexakisphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent, 1 disulfide (covalent ligand, disulfide).
Compared structures
- 6ES8 · HIV capsid hexamer with IP6 ligand · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9V8I5
- Elsewhere: RCSB PDB 6ES8 · PDBe 6ES8 · UniProt B9V8I5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.