MolNFT v1 · #147777 · protein
Crystal structure of the 43K ATPase domain of thermus thermophilus gyrase B in complex with an aminocoumarin
6ENH · DNA gyrase subunit B: “Crystal structure of the 43K ATPase domain of thermus thermophilus gyrase B in complex with an aminocoumarin”. X-ray diffraction, 1 ligand (BHW), 1 pocket (best druggability 0.49). MolNFT v1 #147777 on…
- PDB
- 6ENH
- Type
- protein
- Length
- 366 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA gyrase subunit B
- EC
- 5.99.1.3
- UniProt
- Q5SHZ4
- Ligands
- BHW
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA gyrase subunit B (EC 5.99.1.3) | protein | 366 | 41% helix, 28% strand | Q5SHZ4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.49 | 0.81 | 19 | empty |
Compared structures
- 6ENH · Crystal structure of the 43K ATPase domain of Thermus thermophilus gyrase B in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5SHZ4 · AlphaFold monomer V2.0 prediction for DNA gyrase subunit B (Q5SHZ4) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SHZ4
- Elsewhere: RCSB PDB 6ENH · PDBe 6ENH · UniProt Q5SHZ4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.