MolNFT v1 · #147748 · protein
Htxb from pseudomonas stutzeri in complex with phosphite to 1.25 a resolution
6EMN · Probable phosphite transport system-binding protein htxb: “Htxb from pseudomonas stutzeri in complex with phosphite to 1.25 a resolution”. X-ray diffraction, 2 ligands (78T, MG), 1 pocket (best druggability 0.55). MolNFT v1 #147748…
- PDB
- 6EMN
- Type
- protein
- Length
- 258 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable phosphite transport system-binding protein htxb
- UniProt
- O69061
- Ligands
- 78T, MG
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable phosphite transport system-binding protein htxb | protein | 258 | 42% helix, 24% strand | O69061 |
Ligands and binding sites
- 78T · oxidanylphosphinate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.55 | 0.90 | 25 | empty |
Compared structures
- 6EMN · HtxB from Pseudomonas stutzeri in complex with phosphite to 1.25 A resolution · the same entry in another collection · chain A against A, TM-score 1.00
- O69061 · AlphaFold monomer V2.0 prediction for probable phosphite transport system-binding protein… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O69061
- Elsewhere: RCSB PDB 6EMN · PDBe 6EMN · UniProt O69061
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