MolNFT v1 · #147691 · protein

Direct-evolutioned unspecific peroxygenase from agrocybe aegerita, in complex with 1-naphthol (I)

6EKX: “Direct-evolutioned unspecific peroxygenase from agrocybe aegerita, in complex with 1-naphthol (I)”. X-ray diffraction, 6 ligands (1NP, HEM, NAG). MolNFT v1 #147691 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6EKX
Type: protein
Length: 324 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: B9W4V6
Ligands: 1NP, HEM, NAG, MG, CL, PO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	324	—	B9W4V6

Ligands and binding sites

1NP · 1-naphthol · ligand · 2 copies · chains A
HEM · Protoporphyrin IX containing Fe · ligand · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · chains A
PO4 · Phosphate ion · ion · chains A
MOH · Methanol · additive · 23 copies · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6EKX · Direct-evolutioned unspecific peroxygenase from Agrocybe aegerita, in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
B9W4V6 · AlphaFold monomer V2.0 prediction for aromatic peroxygenase (B9W4V6) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B9W4V6
Elsewhere: RCSB PDB 6EKX · PDBe 6EKX · UniProt B9W4V6

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