MolNFT v1 · #147653 · protein
Yersinia yscu C-terminal fragment in complex with a synthetic compound
6EJP: “Yersinia yscu C-terminal fragment in complex with a synthetic compound”. X-ray diffraction, 4 ligands (B8E, NA, PO4). MolNFT v1 #147653 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EJP
- Type
- protein
- Length
- 281 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P69986
- Ligands
- B8E, NA, PO4, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 53 | — | P69986 |
| C | — | protein | 87 | — | P69986 |
| B | — | protein | 51 | — | P69986 |
| D | — | protein | 90 | — | P69986 |
Ligands and binding sites
- B8E · methyl 2-(5-methyl-2-phenyl-1,3-thiazol-4-yl)ethanoate · ligand · 2 copies · chains C, D
- NA · Sodium ion · metal · chains C
- PO4 · Phosphate ion · ion · 3 copies · chains A, C, B
- CL · Chloride ion · ion · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6EJP · Yersinia YscU C-terminal fragment in complex with a synthetic compound · the same entry in another collection · chain D against D, TM-score 1.00
- P69986 · AlphaFold monomer V2.0 prediction for yop proteins translocation protein U (P69986) · a predicted model of the same protein · chain C against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69986
- Elsewhere: RCSB PDB 6EJP · PDBe 6EJP · UniProt P69986
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