MolNFT v1 · #147571 · protein
Ompt (in-vitro folded), an outer membrane protein of vibrio cholerae
6EHD · Ompt protein: “Ompt (in-vitro folded), an outer membrane protein of vibrio cholerae”. X-ray diffraction, 3 pockets (best druggability 0.63). MolNFT v1 #147571 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EHD
- Type
- protein
- Length
- 322 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ompt protein
- UniProt
- A0A0H3AME7
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 74% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ompt protein | protein | 322 | 2% helix, 74% strand | A0A0H3AME7 |
Ligands and binding sites
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 10 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.63 | 0.85 | 31 | C8E |
| 2 | 509 | 0.61 | 0.75 | 71 | C8E, MES |
| 3 | 171 | 0.52 | 0.78 | 23 | empty |
Compared structures
- 6EHD · OmpT (in-vitro folded), an outer membrane protein of Vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3AME7
- Elsewhere: RCSB PDB 6EHD · PDBe 6EHD · UniProt A0A0H3AME7
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