MolNFT v1 · #147543 · protein
T181N cucumene synthase
6EGK: “T181N cucumene synthase”. X-ray diffraction, 11 pockets (best druggability 0.82). MolNFT v1 #147543 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EGK
- Type
- protein
- Length
- 607 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cucumene synthase
- UniProt
- B5GLM7
- Pockets
- 11 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cucumene synthase | protein | 307 | 75% helix, 0% strand | B5GLM7 |
| B | Cucumene synthase | protein | 300 | 73% helix, 0% strand | B5GLM7 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 925 | 0.82 | 0.84 | 55 | empty |
| 2 | 764 | 0.80 | 0.83 | 49 | empty |
| 3 | 514 | 0.70 | 0.79 | 43 | empty |
| 4 | 51 | 0.57 | 0.91 | 15 | empty |
| 5 | 55 | 0.52 | 0.88 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1737 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6EGK · T181N Cucumene Synthase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5GLM7
- Elsewhere: RCSB PDB 6EGK · PDBe 6EGK · UniProt B5GLM7
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