MolNFT v1 · #147530 · protein
Crystal structure of DPR4 IG1-IG2 in complex with dip-eta IG1-IG3
6EG0: “Crystal structure of DPR4 IG1-IG2 in complex with dip-eta IG1-IG3”. X-ray diffraction, 4 ligands (NAG, FUC, BMA). MolNFT v1 #147530 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EG0
- Type
- protein
- Length
- 510 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q59DX6, Q9VMN9
- Ligands
- NAG, FUC, BMA, MAN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 201 | — | Q59DX6 |
| B | — | protein | 309 | — | Q9VMN9 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 11 copies · chains A, B
- FUC · alpha-L-fucopyranose · sugar · 4 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 3 copies
- MAN · alpha-D-mannopyranose · sugar · 3 copies
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains B
- ACT · Acetate ion · additive · 2 copies · chains B
- EDO · 1,2-ethanediol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6EG0 · Crystal structure of Dpr4 Ig1-Ig2 in complex with DIP-Eta Ig1-Ig3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59DX6
- Every structure of UniProt Q9VMN9
- Elsewhere: RCSB PDB 6EG0 · PDBe 6EG0 · UniProt Q59DX6 · UniProt Q9VMN9
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