MolNFT v1 · #147529 · protein
Crystal structure of dip-theta IG1-3
6EFZ · Dpr-interacting protein theta: “Crystal structure of dip-theta IG1-3”. X-ray diffraction, 4 ligands (NAG, BMA, MAN). MolNFT v1 #147529 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EFZ
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dpr-interacting protein theta
- UniProt
- Q9VMN6
- Ligands
- NAG, BMA, MAN, FUC
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dpr-interacting protein theta | protein | 296 | 1% helix, 55% strand | Q9VMN6 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 2 copies
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide, 3 glycan (disulfide, N-glycosylation).
Compared structures
- 6EFZ · Crystal Structure of DIP-Theta Ig1-3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VMN6
- Elsewhere: RCSB PDB 6EFZ · PDBe 6EFZ · UniProt Q9VMN6
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