MolNFT v1 · #147510 · protein

Gspb siglec domain

6EF9 · Platelet binding protein gspb - siglec domain: “Gspb siglec domain”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #147510 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6EF9
Type: protein
Length: 122 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Platelet binding protein gspb - siglec domain
Ligands: NA

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Platelet binding protein gspb - siglec domain	protein	122	11% helix, 43% strand	—

Ligands and binding sites

NA · Sodium ion · metal · 6 copies · chains A
FMT · Formic acid · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6EF9 · GspB Siglec domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6EF9 · PDBe 6EF9

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