MolNFT v1 · #147500 · protein
Crystal structure of the thiol-disulfide exchange protein alpha-DSBA2 from wolbachia pipientis
6EEZ · Dsba-like disulfide oxidoreductase: “Crystal structure of the thiol-disulfide exchange protein alpha-DSBA2 from wolbachia pipientis”. X-ray diffraction, 9 pockets (best druggability 0.68). MolNFT v1 #147500 on GenesisL1: 3D…
- PDB
- 6EEZ
- Type
- protein
- Length
- 738 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dsba-like disulfide oxidoreductase
- UniProt
- Q73FL6
- Pockets
- 9 · best druggability 0.68
Structure
x-ray diffraction · 3 distinct chains · 57% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dsba-like disulfide oxidoreductase | protein | 186 | 59% helix, 12% strand | Q73FL6 |
| B | Dsba-like disulfide oxidoreductase | protein | 190 | 57% helix, 13% strand | Q73FL6 |
| C, D | Dsba-like disulfide oxidoreductase | protein | 181 | 56% helix, 13% strand | Q73FL6 |
Pockets
9 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 758 | 0.68 | 0.75 | 68 | empty |
| 2 | 134 | 0.48 | 0.78 | 26 | empty |
| 3 | 97 | 0.35 | 0.74 | 21 | empty |
| 4 | 96 | 0.35 | 0.74 | 20 | empty |
| 5 | 115 | 0.35 | 0.73 | 21 | empty |
Interfaces
4 interfaces between chains.
- A–B · 651 Ų buried · 11 hydrogen bonds · protein-protein
- B–D · 353 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 296 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 229 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6EEZ · Crystal Structure of the thiol-disulfide exchange protein alpha-DsbA2 from Wolbachia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q73FL6
- Elsewhere: RCSB PDB 6EEZ · PDBe 6EEZ · UniProt Q73FL6
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