MolNFT v1 · #147449 · protein

TRNA 2'-phosphotransferase

6EDE: “TRNA 2'-phosphotransferase”. X-ray diffraction, 1 ligand (HQG). MolNFT v1 #147449 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6EDE
Type: protein
Length: 178 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A3DJX6
Ligands: HQG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	178	—	A3DJX6

Ligands and binding sites

HQG · [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6EDE · tRNA 2'-phosphotransferase · the same entry in another collection · chain A against A, TM-score 1.00
A3DJX6 · AlphaFold monomer V2.0 prediction for probable RNA 2'-phosphotransferase (A3DJX6) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A3DJX6
Elsewhere: RCSB PDB 6EDE · PDBe 6EDE · UniProt A3DJX6

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