MolNFT v1 · #147444 · DNA
NMR structure for SP1 transcription factor duplex 5'-D(TGGGCGGGA)
6ED9 · DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*A)-3'): “NMR structure for SP1 transcription factor duplex 5'-D(TGGGCGGGA)”. Solution nmr. MolNFT v1 #147444 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ED9
- Type
- DNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*A)-3'); DNA (5'-D(*TP*CP*CP*CP*GP*CP*CP*CP*A)-3')
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*A)-3') | dna | 9 | — | — |
| B | DNA (5'-D(*TP*CP*CP*CP*GP*CP*CP*CP*A)-3') | dna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 435 Ų buried · 50 hydrogen bonds · nucleic-nucleic
Compared structures
- 6ED9 · NMR structure for Sp1 transcription factor duplex 5'-d(TGGGCGGGA) · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6ED9 · PDBe 6ED9
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