MolNFT v1 · #147440 · protein

Faecalibacterium prausnitzii beta-glucuronidase

6ED2 · Glycosyl hydrolase family 2, tim barrel domain protein: “Faecalibacterium prausnitzii beta-glucuronidase”. X-ray diffraction, 1 ligand (MG), 4 pockets (best druggability 0.59). MolNFT v1 #147440 on GenesisL1: 3D structure, binding…

PDB: 6ED2
Type: protein
Length: 591 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycosyl hydrolase family 2, tim barrel domain protein
UniProt: C7H4D2
Ligands: MG
Pockets: 4 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycosyl hydrolase family 2, tim barrel domain protein	protein	591	21% helix, 36% strand	C7H4D2

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A
FMT · Formic acid · additive · 4 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	96	0.59	0.87	26	empty
2	176	0.58	0.82	41	empty
3	190	0.52	0.78	31	GOL, MG, FMT
4	89	0.37	0.76	20	empty

Compared structures

6ED2 · Faecalibacterium prausnitzii beta-glucuronidase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7H4D2
Elsewhere: RCSB PDB 6ED2 · PDBe 6ED2 · UniProt C7H4D2

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