MolNFT v1 · #147410 · protein
Glutamylation domain, tbtb, from thiomuracin biosynthesis
6EC7 · Lantibiotic dehydratase domain protein: “Glutamylation domain, tbtb, from thiomuracin biosynthesis”. X-ray diffraction, 9 pockets (best druggability 0.74). MolNFT v1 #147410 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6EC7
- Type
- protein
- Length
- 796 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lantibiotic dehydratase domain protein
- UniProt
- D6Y502
- Pockets
- 9 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lantibiotic dehydratase domain protein | protein | 796 | 45% helix, 19% strand | D6Y502 |
Pockets
9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 822 | 0.74 | 0.78 | 82 | empty |
| 2 | 673 | 0.74 | 0.80 | 87 | empty |
| 3 | 266 | 0.58 | 0.78 | 30 | empty |
| 4 | 123 | 0.57 | 0.84 | 29 | empty |
| 5 | 229 | 0.56 | 0.78 | 25 | empty |
Compared structures
- 6EC7 · Glutamylation domain, TbtB, from thiomuracin biosynthesis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6Y502
- Elsewhere: RCSB PDB 6EC7 · PDBe 6EC7 · UniProt D6Y502
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