MolNFT v1 · #147400 · protein
Crystal structure of aquifex aeolicus lpxe
6EBU: “Crystal structure of aquifex aeolicus lpxe”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.36). MolNFT v1 #147400 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EBU
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lpxe
- UniProt
- O67603
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lpxe | protein | 165 | 75% helix, 1% strand | O67603 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
- BOG · octyl beta-D-glucopyranoside · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.36 | 0.73 | 17 | empty |
Compared structures
- 6EBU · Crystal structure of Aquifex aeolicus LpxE · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67603
- Elsewhere: RCSB PDB 6EBU · PDBe 6EBU · UniProt O67603
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