MolNFT v1 · #147334 · protein
DHF46 filament
6E9R: “DHF46 filament”. Electron microscopy, 20 pockets (best druggability 0.82). MolNFT v1 #147334 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6E9R
- Type
- protein
- Length
- 4,104 residues
- Chains
- 24
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DHF46 filament
- Pockets
- 20 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A, C, D, J, E, O, T, K, F, P, U, L, G, Q, V, M, H, R, W, N, I, S, X | DHF46 filament | protein | 171 | 91% helix, 0% strand | — |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 971 | 0.82 | 0.83 | 92 | empty |
| 2 | 901 | 0.81 | 0.83 | 91 | empty |
| 3 | 925 | 0.80 | 0.82 | 84 | empty |
| 4 | 801 | 0.80 | 0.83 | 83 | empty |
| 5 | 1093 | 0.79 | 0.81 | 94 | empty |
Interfaces
56 interfaces between chains.
- C–W · 306 Ų buried · 1 hydrogen bond · protein-protein
- G–S · 306 Ų buried · 1 hydrogen bond · protein-protein
- C–E · 305 Ų buried · 1 hydrogen bond · protein-protein
- Q–X · 305 Ų buried · 1 hydrogen bond · protein-protein
- B–T · 305 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6E9R · DHF46 filament · the same entry in another collection · chain T against T, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6E9R · PDBe 6E9R
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