MolNFT v1 · #14733 · protein
Linb (haloalkane dehalogenase) from sphingomonas paucimobilis UT26 at atomic resolution
1MJ5 · 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase: “Linb (haloalkane dehalogenase) from sphingomonas paucimobilis UT26 at atomic resolution”. X-ray diffraction, 2 ligands (MG, CL), 2 pockets (best druggability 0.76). MolNFT v1 #14733…
- PDB
- 1MJ5
- Type
- protein
- Length
- 297 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase
- EC
- 3.8.1.5
- UniProt
- P51698
- Ligands
- MG, CL
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase (EC 3.8.1.5) | protein | 297 | 43% helix, 19% strand | P51698 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.76 | 0.98 | 20 | CL |
| 2 | 50 | 0.37 | 0.80 | 17 | empty |
Compared structures
- 1MJ5 · LINB (haloalkane dehalogenase) from sphingomonas paucimobilis UT26 at atomic resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51698
- Elsewhere: RCSB PDB 1MJ5 · PDBe 1MJ5 · UniProt P51698
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