MolNFT v1 · #147278 · RNA

Crystal structure of the corn aptamer in complex with tht

6E81 · RNA (36-mer): “Crystal structure of the corn aptamer in complex with tht”. X-ray diffraction, 2 ligands (TFX, K), 1 pocket (best druggability 0.55). MolNFT v1 #147278 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6E81
Type: RNA
Length: 36 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (36-mer)
Ligands: TFX, K
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (36-mer)	rna	36	—	—

Ligands and binding sites

TFX · 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium · ligand · chains A
K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	346	0.55	0.75	20	empty

Compared structures

6E81 · Crystal structure of the Corn aptamer in complex with ThT · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6E81 · PDBe 6E81

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