MolNFT v1 · #147256 · protein
Structure of the inhibitory nkr-P1B receptor bound to the host-encoded ligand, clr-B
6E7D: “Structure of the inhibitory nkr-P1B receptor bound to the host-encoded ligand, clr-B”. X-ray diffraction, 2 ligands (NAG, SO4). MolNFT v1 #147256 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6E7D
- Type
- protein
- Length
- 2,877 residues
- Chains
- 24
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q91V08, Q99JB4
- Ligands
- NAG, SO4
Structure
x-ray diffraction · 14 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 121 | — | Q91V08 |
| B | — | protein | 121 | — | Q91V08 |
| C | — | protein | 120 | — | Q91V08 |
| E, F, H, J, L, N, P | — | protein | 122 | — | Q91V08 |
| G, I, M | — | protein | 119 | — | Q91V08 |
| K, O | — | protein | 118 | — | Q91V08 |
| Q | — | protein | 117 | — | Q99JB4 |
| R | — | protein | 112 | — | Q99JB4 |
| S | — | protein | 122 | — | Q99JB4 |
| T | — | protein | 122 | — | Q99JB4 |
| U | — | protein | 116 | — | Q99JB4 |
| V | — | protein | 121 | — | Q99JB4 |
| W | — | protein | 118 | — | Q99JB4 |
| X | — | protein | 119 | — | Q99JB4 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains Q, R, S, T, U, V, W, X
- SO4 · Sulfate ion · ion · 9 copies · chains D, S, P, Q, N, R, J, L, T, F, U, H, V, W, E, X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6E7D · Structure of the inhibitory NKR-P1B receptor bound to the host-encoded ligand, Clr-b · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91V08
- Every structure of UniProt Q99JB4
- Elsewhere: RCSB PDB 6E7D · PDBe 6E7D · UniProt Q91V08 · UniProt Q99JB4
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